PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G259400.1.p
Common NameSb10g029595, SORBIDRAFT_10g029595
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 219aa    MW: 23135.1 Da    PI: 9.8096
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G259400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.95.9e-32111111100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka  ++  r++a+++l++eA++r rdP  G+++ ++ l+++ +
  Sobic.010G259400.1.p  11 ACAVCKHQRRKCEPNCELATYFPAHRMNDFRALHLVFGVANLTKLIKANaSDAARRRAAETLTWEARWRERDPSDGCYREVSCLRRDNA 99 
                           7**********************************************9835555*********************************** PP

                DUF260  89 qlkaelallkee 100
                            l+ae a+l+++
  Sobic.010G259400.1.p 100 VLRAENAALRRQ 111
                           *****9999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.63810112IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-2811108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTGGGNGGRG ACAVCKHQRR KCEPNCELAT YFPAHRMNDF RALHLVFGVA NLTKLIKANA  60
SDAARRRAAE TLTWEARWRE RDPSDGCYRE VSCLRRDNAV LRAENAALRR QLAEQQQLLL  120
CWSNACSNTG GALLHSASAN NGTPPCGGDG LLTAARPHHA PAAPAAMHTT LAYRGMPVCT  180
MTTANGGGRR PASDAAAIAI RGGGGQVDAS RDNKSSAR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9732221e-150EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437573.11e-151hypothetical protein SORBIDRAFT_10g029595, partial
TrEMBLC5Z9D61e-151C5Z9D6_SORBI; Putative uncharacterized protein Sb10g029595 (Fragment)
STRINGSb10g029595.11e-150(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Representative plantOGRP1421444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.14e-21LOB domain-containing protein 2